This package provides functions for analyzing genomic regions:

There are functions doing:

  • Basic statistics of regions such as proportion in genome or numbers of regions in each sample
  • General region finder which looks for genomic regions with certain features
  • Annotation to gene model / genomic features
  • Correlation / enrichment to genomic features
  • Subgroup specific regions
  • Hilbert curve visualization, support multiple layers
  • Heatmap with alignment to certain genomic feature, such as methylation around CpG island.

Download GenomicRegions

example hilbert curve

 

 

example something